Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Sfd5311/cells index #294

Open
wants to merge 10 commits into
base: devel
Choose a base branch
from
Open

Sfd5311/cells index #294

wants to merge 10 commits into from

Conversation

SFD5311
Copy link
Contributor

@SFD5311 SFD5311 commented Apr 12, 2021

@jswelling As we discussed, I parameterized the differences between the DAGs for each modality and generated them in a similar manner to the dags for the rna assays. The task ids should now be globally unique. We now hit ingest api to resolve uuids to abs paths, and use airflow connection hooks for API calls.

I've asserted the existence of a "cells_api_connection" which should map to "https://cells.api.hubmapconsortium.org/api" and a "search_api_connection" which also does not yet exist.

SFD5311 and others added 8 commits March 14, 2021 17:52
This extra complexity is only necessary when multiple distinct DAGs are
identical except for a few small parameter values.
I'm not sure about having each 't_maybe_keep_cwlN' operator chained to
t_move_data and to t_join, and the BranchPythonOperators almost definitely
need some work too.
… each pipeline may or may not run, depending on whether or not there's new datasets in that modality
@SFD5311 SFD5311 requested a review from jswelling April 12, 2021 18:27
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants